io.github.andylbrummer/neural-mcp

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# Math-Physics-ML MCP System

[![PyPI - Math MCP](https://img.shields.io/pypi/v/scicomp-math-mcp?label=scicomp-math-mcp)](https://pypi.org/project/scicomp-math-mcp/)
[![PyPI - Quantum MCP](https://img.shields.io/pypi/v/scicomp-quantum-mcp?label=scicomp-quantum-mcp)](https://pypi.org/project/scicomp-quantum-mcp/)
[![PyPI - Molecular MCP](https://img.shields.io/pypi/v/scicomp-molecular-mcp?label=scicomp-molecular-mcp)](https://pypi.org/project/scicomp-molecular-mcp/)
[![PyPI - Neural MCP](https://img.shields.io/pypi/v/scicomp-neural-mcp?label=scicomp-neural-mcp)](https://pypi.org/project/scicomp-neural-mcp/)
[![Documentation](https://img.shields.io/badge/docs-GitHub%20Pages-blue)](https://andylbrummer.github.io/math-mcp/)
[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)

GPU-accelerated [Model Context Protocol](https://modelcontextprotocol.io) servers for computational mathematics, physics simulations, and machine learning.

## 📚 Documentation

**[View Full Documentation →](https://andylbrummer.github.io/math-mcp/)**

| Guide | Description |
|-------|-------------|
| [Installation](https://andylbrummer.github.io/math-mcp/getting-started/installation) | Setup instructions for pip, uv, and uvx |
| [Configuration](https://andylbrummer.github.io/math-mcp/getting-started/configuration) | Claude Desktop & Claude Code setup |
| [Quick Start](https://andylbrummer.github.io/math-mcp/getting-started/quick-start) | Get running in 5 minutes |
| [API Reference](https://andylbrummer.github.io/math-mcp/api/overview) | Complete tool documentation |
| [Visual Demos](https://andylbrummer.github.io/math-mcp/demos/) | Interactive physics simulations |

## About

This system enables AI assistants to perform real scientific computing — from solving differential equations to running molecular dynamics simulations.

<table>
<tr>
<td align="center" width="50%">
<img src="docs/static/img/demos/double_slit.webp" alt="Double-Slit Interference" width="100%"/>
<br/><b>Quantum Wave Mechanics</b><br/>
<sub>Double-slit interference pattern from solving the time-dependent Schrödinger equation</sub>
</td>
<td align="center" width="50%">
<img src="docs/static/img/demos/galaxy_collision.webp" alt="Galaxy Collision" width="100%"/>
<br/><b>N-Body Dynamics</b><br/>
<sub>Galaxy merger simulation using gravitational N-body calculations</sub>
</td>
</tr>
<tr>
<td align="center" width="50%">
<img src="docs/static/img/demos/bragg_hexagonal.webp" alt="Bragg Scattering" width="100%"/>
<br/><b>Crystal Diffraction</b><br/>
<sub>Bragg scattering from a hexagonal (graphene-like) lattice</sub>
</td>
<td align="center" width="50%">
<img src="docs/static/img/demos/triple_slit.webp" alt="Triple-Slit" width="100%"/>
<br/><b>Multi-Slit Interference</b><br/>
<sub>Complex interference patterns from three coherent sources</sub>
</td>
</tr>
</table>

## Overview

This system provides **4 specialized MCP servers** that bring scientific computing capabilities to AI assistants like Claude:

| Server | Description | Tools |
|--------|-------------|-------|
| **Math MCP** | Symbolic algebra (SymPy) + numerical computing | 14 |
| **Quantum MCP** | Wave mechanics & Schrodinger simulations | 12 |
| **Molecular MCP** | Classical molecular dynamics | 15 |
| **Neural MCP** | Neural network training & evaluation | 16 |

**Key Features:**
- GPU acceleration with automatic CUDA detection (10-100x speedup)
- Async task support for long-running simulations
- Cross-MCP workflows via URI-based data sharing
- Progressive discovery for efficient tool exploration

## Quick Start

### Installation with uvx (Recommended)

Run any MCP server directly without installation:

```bash
# Run individual servers
uvx scicomp-math-mcp
uvx scicomp-quantum-mcp
uvx scicomp-molecular-mcp
uvx scicomp-neural-mcp
```

### Installation with pip/uv

```bash
# Install individual servers
pip install scicomp-math-mcp
pip install scicomp-quantum-mcp
pip install scicomp-molecular-mcp
pip install scicomp-neural-mcp

# Or install all at once
pip install scicomp-math-mcp scicomp-quantum-mcp scicomp-molecular-mcp scicomp-neural-mcp

# With GPU support (requires CUDA)
pip install scicomp-math-mcp[gpu] scicomp-quantum-mcp[gpu] scicomp-molecular-mcp[gpu] scicomp-neural-mcp[gpu]
```

## Configuration

### Claude Desktop

Add to your Claude Desktop configuration file:

**macOS**: `~/Library/Application Support/Claude/claude_desktop_config.json`
**Windows**: `%APPDATA%\Claude\claude_desktop_config.json`

```json
{
  "mcpServers": {
    "math-mcp": {
      "command": "uvx",
      "args": ["scicomp-math-mcp"]
    },
    "quantum-mcp": {
      "command": "uvx",
      "args": ["scicomp-quantum-mcp"]
    },
    "molecular-mcp": {
      "command": "uvx",
      "args": ["scicomp-molecular-mcp"]
    },
    "neural-mcp": {
      "command": "uvx",
      "args": ["scicomp-neural-mcp"]
    }
  }
}
```

### Claude Code

Add to your project's `.mcp.json`:

```json
{
  "mcpServers